Health Sciences Library System Workshop

Gene Regulation: TRANSFAC, ENCODE, & more

November 8, 2017
1:00 PM - 4:00 PM
Ansuman Chattopadhyay
Assistant Director for Molecular Biology Information Services
Scaife Hall, Falk Library, Classroom 2
University of Pittsburgh – Health Sciences Library System

This hands-on workshop provides an overview of resources and search strategies on transcriptional regulation. Emphasis will be given to databases, including TRANSFAC (transcription factors), Proteome (promoter sequences) and RegulomeDB (SNPs with known and predicted regulatory elements). Software that will be covered: BIOBASE Match to locate transcription factor binding sites present in a query sequence, UCSC Genome Browser to visualize the regulatory regions present in the human genome generated by the Encyclopedia of DNA Elements (ENCODE) project, and the HSLS licensed tool – Correlation Engine (aka NextBio) to mine microarray/RNA Seq data from the Gene Expression Omnibus (GEO) repository.

Please register for: TRANSFAC/Match + PROTEOME and Correlation Engine.

Click here to register for this workshop.