Health Sciences Library System Workshop

ChIP-Seq & CLC Genomics



Date
April 11, 2018
Time
1:00 PM - 4:00 PM
Speaker(s)
Ansuman Chattopadhyay
Assistant Director for Molecular Biology Information Services
Location
Scaife Hall, Falk Library, Classroom 2
Category
University of Pittsburgh – Health Sciences Library System
Contact
Ansuman Chattopadhyay



412-648-1297
ansuman@pitt.edu
Description

This hands-on workshop provides an introduction to chromatin profile analysis (Transcription Factor ChIP-Seq/ Histone ChIp-Seq/ATAC-Seq) using the library-licensed CLC Genomics Workbench. Learn how to (1) import NGS reads from an NCBI GEO dataset (GSE63716, GSE95339), (2) map the reads to a reference genome, (3) call peaks, and (4) visualize the results.

Website: http://hsls.libguides.com/chipseq

Please also register for CLC Genomics Workbench.

You must also sign up for a Center for Research Computing HPC allocation.

Register for workshop here.