Health Sciences Library System Workshop

Variant Detection & Analysis: CLC Genomics & IVA



Date
February 27, 2019
Time
1:00 PM - 4:00 PM
Speaker(s)
Ansuman Chattopadhyay
Assistant Director for Molecular Biology Information Services
Location
Scaife Hall, Falk Library, Classroom 2
Category
University of Pittsburgh - Health Sciences Library System
Contact
Ansuman Chattopadhyay



412-648-8866
ansuman@pitt.edu
Description

This hands-on workshop focuses on human genetic variations and cancer mutations. It covers identification of variants using CLC Genomics Workbench software and introduces variation databases (dbSNP, ClinVar, OMIM, DGV, PheGenI, HGMD, Correlation Engine, COSMIC, Broad Tumor Portal, gnomAD Browser, RegulomeDb). The workshop teaches how to use bioinformatics tools for functional analysis of mutations and covers web tools such as EBI Variant Effect Predictor, Ingenuity Variant Analysis (IVA), and PredictSNP2.

Workshop Guide: https://hsls.libguides.com/MolBioWorkshops/VarDet

Please register for:

    CLC Genomics Workbench
    Biomedical Genomics Workbench
    IVA

You must also sign up for a Center for Research Computing HPC allocation and mention your intention to attend the HSLS-offered workshop on Variant Detection.

Register for this class.