Health Sciences Library System Workshop

Pathway Analysis



Date
February 28, 2018
Time
1:00 PM - 4:00 PM
Speaker(s)
Ansuman Chattopadhyay
Assistant Director for Molecular Biology Information Services
Location
Scaife Hall, Falk Library, Classroom 2
Category
University of Pittsburgh – Health Sciences Library System
Contact
Ansuman Chattopadhyay



412-648-1297
ansuman@pitt.edu
Description

This hands-on workshop introduces open access and commercial biological pathway informatics tools. Learn how to mine a list of differentially-expressed genes associated with a disease of interest by searching the NCBI Gene Expression Omnibus (GEO) using the library-licensed tool Correlation Engine. Then uncover the biology hidden behind the extracted gene list by searching protein-protein interactions and literature-curated gene/protein knowledgebases using pathway informatics software, including Ingenuity Pathway Analysis (IPA), NIH DAVID, Enrichr, MetaCore, and Key Pathway Advisor (KPA).

Website: http://hsls.libguides.com/pathwayinformatics

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