Health Sciences Library System Workshop

Pathway Analysis: NIH DAVID, IPA, KPA, & more

November 29, 2017
1:00 PM - 4:00 PM
Ansuman Chattopadhyay
Assistant Director for Molecular Biology Information Services
Scaife Hall, Falk Library, Classroom 2
University of Pittsburgh – Health Sciences Library System

This hands-on workshop introduces open access and commercial biological pathway informatics tools. First we will learn how to mine a list of differentially expressed genes associated with a disease of interest by searching the NCBI Gene Expression Omnibus (GEO) using the library-licensed tool NextBio. Then we will focus on uncovering the biology hidden behind the extracted gene list by searching protein-protein interactions and literature-curated gene/protein knowledgebases using pathway informatics software, including Ingenuity Pathway Analysis (IPA), NIH DAVID, Enrichr, MetaCore, and Key Pathway Advisor (KPA).

Please register for: IPA, Correlation Engine, MetaCore, and KPA.

Click here to register for this workshop.